Metagenomics analysis
Metagenomics is the study of genetic material recovered directly from environmental samples, offering insights into the diversity and functions of microbial communities. Epi2Me, a cloud-based platform by Oxford Nanopore Technologies, simplifies the analysis of metagenomic data. Below is a comprehensive guide to analyzing metagenomics using Epi2Me.
Software for metagenomics analysis
Epi2Me lab
Docker
Materials:
Processed data (.fasq or .bam)
Sample sheet (Optional)
Guide to Analyzing Metagenomics Using Epi2Me
Create an Account
- Register for an account at Epi2Me
Upload Data:
Log in to your Epi2Me account.
Select the Appropriate Workflow
Epi2Me provides several workflows tailored to specific applications. For metagenomics, the most relevant workflows are:
Launch workflow
Run the Workflow:
Upload your data (fastq or bam files)
After uploading your data, choose the workflow and start the analysis.
Monitor progress via the Epi2Me dashboard.